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1

Dynamics and Calcium Association to the N-Terminal Regulatory Domain of Human Cardiac Troponin C: A Multiscale Computational Study

Lindert, Steffen, Kekenes-Huskey, Peter M., Huber, Gary, Pierce, Levi, McCammon, J. Andrew

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 5.13 MB

english, 2012

2

Accurate and Reliable Prediction of Relative Ligand Binding Potency in Prospective Drug Discovery by Way of a Modern Free-Energy Calculation Protocol and Force Field

Wang, Lingle, Wu, Yujie, Deng, Yuqing, Kim, Byungchan, Pierce, Levi, Krilov, Goran, Lupyan, Dmitry, Robinson, Shaughnessy, Dahlgren, Markus K., Greenwood, Jeremy, Romero, Donna L., Masse, Craig, Knigh

Journal:

Journal of the American Chemical Society

Year:

2015

Language:

english

File:

PDF, 37.64 MB

english, 2015

3

Kinematic and Kinetic Factors Associated with Leg Reach Asymmetry During the Star Excursion Balance Test in Division I Athletes

Ortega, Santiago L., Ibarra, Sergio, Pierce, Rebecca, Levy, Susan, Gombatto, Sara P.

Journal:

Physical Therapy in Sport

Year:

2020

File:

PDF, 689 KB

2020

4

Multi-Timescale Conformational Dynamics of the SH3 Domain of CD2-Associated Protein using NMR Spectroscopy and Accelerated Molecular Dynamics

Dr. Loïc Salmon, Dr. Levi Pierce, Alexander Grimm, Dr. Jose-Luis Ortega Roldan, Dr. Luca Mollica, Dr. Malene Ringkjøbing Jensen, Prof. Nico van Nuland, Dr. Phineus R. L. Markwick, Prof. J. Andrew McCa

Journal:

Angewandte Chemie

Year:

2012

Language:

english

File:

PDF, 1.37 MB

english, 2012

5

Innenrücktitelbild: Multi-Timescale Conformational Dynamics of the SH3 Domain of CD2-Associated Protein using NMR Spectroscopy and Accelerated Molecular Dynamics (Angew. Chem. 25/2012)

Dr. Loïc Salmon, Dr. Levi Pierce, Alexander Grimm, Dr. Jose-Luis Ortega Roldan, Dr. Luca Mollica, Dr. Malene Ringkjøbing Jensen, Prof. Nico van Nuland, Dr. Phineus R. L. Markwick, Prof. J. Andrew McCa

Journal:

Angewandte Chemie

Year:

2012

File:

PDF, 1.40 MB

2012

6

Multi-Timescale Conformational Dynamics of the SH3 Domain of CD2-Associated Protein using NMR Spectroscopy and Accelerated Molecular Dynamics

Dr. Loïc Salmon, Dr. Levi Pierce, Alexander Grimm, Dr. Jose-Luis Ortega Roldan, Dr. Luca Mollica, Dr. Malene Ringkjøbing Jensen, Prof. Nico van Nuland, Dr. Phineus R. L. Markwick, Prof. J. Andrew McCa

Journal:

Angewandte Chemie International Edition

Year:

2012

Language:

english

File:

PDF, 1.39 MB

english, 2012

7

Inside Back Cover: Multi-Timescale Conformational Dynamics of the SH3 Domain of CD2-Associated Protein using NMR Spectroscopy and Accelerated Molecular Dynamics (Angew. Chem. Int. Ed. 25/2012)

Dr. Loïc Salmon, Dr. Levi Pierce, Alexander Grimm, Dr. Jose-Luis Ortega Roldan, Dr. Luca Mollica, Dr. Malene Ringkjøbing Jensen, Prof. Nico van Nuland, Dr. Phineus R. L. Markwick, Prof. J. Andrew McCa

Journal:

Angewandte Chemie International Edition

Year:

2012

File:

PDF, 1.41 MB

2012

8

Mutations in the DBP-Deficiency Protein HSD17B4 Cause Ovarian Dysgenesis, Hearing Loss, and Ataxia of Perrault Syndrome

Sarah B. Pierce, Tom Walsh, Karen M. Chisholm, Ming K. Lee, Anne M. Thornton, Agata Fiumara, John M. Opitz, Ephrat Levy-Lahad, Rachel E. Klevit, Mary-Claire King

Journal:

The American Journal of Human Genetics

Year:

2010

Language:

english

File:

PDF, 538 KB

english, 2010

9

The Molecular Dynamics of Trypanosoma brucei UDP-Galactose 4′-Epimerase: A Drug Target for African Sleeping Sickness

Aaron J. Friedman, Jacob D. Durrant, Levi C. T. Pierce, Thomas J. McCorvie, David J. Timson, J. Andrew McCammon

Journal:

Chemical Biology & Drug Design

Year:

2012

Language:

english

File:

PDF, 3.11 MB

english, 2012

10

DRUG USE AMONG SYDNEY TEENAGERS IN 1985 AND 1986

Susan J. Levy, John P. Pierce

Journal:

Australian and New Zealand Journal of Public Health

Year:

1989

Language:

english

File:

PDF, 593 KB

english, 1989

11

Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites

Allison A Burrow, Laura E Williams, Levi CT Pierce, Yuh-Hwa Wang

Journal:

Year:

2009

Language:

english

File:

PDF, 721 KB

english, 2009

12

Routine Access to Millisecond Time Scale Events with Accelerated Molecular Dynamics

Pierce, Levi C.T., Salomon-Ferrer, Romelia, Augusto F. de Oliveira, Cesar, McCammon, J. Andrew, Walker, Ross C.

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 323 KB

english, 2012

13

Perspectives on Small, Flat Video Displays

Pierce, D.G., Levy, R.A.

Journal:

IEEE Transactions on Consumer Electronics

Year:

1978

Language:

english

File:

PDF, 2.53 MB

english, 1978

14

Structural insight into the separate roles of inositol tetraphosphate and deacetylase-activating domain in activation of histone deacetylase 3

Arrar, Mehrnoosh, Turnham, Rigney, Pierce, Levi, de Oliveira, Cesar Augusto F., McCammon, J. Andrew

Journal:

Protein Science

Year:

2013

Language:

english

File:

PDF, 1.23 MB

english, 2013

15

Improving the Efficiency of Free Energy Calculations in the Amber Molecular Dynamics Package

Kaus, Joseph W., Pierce, Levi T., Walker, Ross C., McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Year:

2013

Language:

english

File:

PDF, 1.67 MB

english, 2013

16

Influence of N-Myristylation and Ligand Binding on the Flexibility of the Catalytic Subunit of Protein Kinase A

Bastidas, Adam C., Pierce, Levi C., Walker, Ross C., Johnson, David A., Taylor, Susan S.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.70 MB

english, 2013

17

Mutations in LARS2, Encoding Mitochondrial Leucyl-tRNA Synthetase, Lead to Premature Ovarian Failure and Hearing Loss in Perrault Syndrome

Pierce, Sarah B., Gersak, Ksenija, Michaelson-Cohen, Rachel, Walsh, Tom, Lee, Ming K., Malach, Daniel, Klevit, Rachel E., King, Mary-Claire, Levy-Lahad, Ephrat

Journal:

The American Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 1.11 MB

english, 2013

18

Drug screening strategy for human membrane proteins: From NMR protein backbone structure to in silica- and NMR-screened hits

Lindert, Steffen, Maslennikov, Innokentiy, Chiu, Ellis J.C., Pierce, Levi C., McCammon, J. Andrew, Choe, Senyon

Journal:

Biochemical and Biophysical Research Communications

Year:

2014

Language:

english

File:

PDF, 3.10 MB

english, 2014

19

Predicting intention to use cocaine in teenagers in Sydney, Australia

Levy, Susan J., Pierce, John P.

Journal:

Addictive Behaviors

Year:

1989

Language:

english

File:

PDF, 491 KB

english, 1989

20

Improved Reweighting of Accelerated Molecular Dynamics Simulations for Free Energy Calculation

Miao, Yinglong, Sinko, William, Pierce, Levi, Bucher, Denis, Walker, Ross C., McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 6.16 MB

english, 2014

21

Trypsinogen activation as observed in accelerated molecular dynamics simulations

Boechi, Leonardo, Pierce, Levi, Komives, Elizabeth A., McCammon, J. Andrew

Journal:

Protein Science

Year:

2014

Language:

english

File:

PDF, 1.54 MB

english, 2014

22

Exploring the Photophysical Properties of Molecular Systems Using Excited State Accelerated ab Initio Molecular Dynamics

Ortiz-Sánchez, Juan Manuel, Bucher, Denis, Pierce, Levi C. T., Markwick, Phineus R. L., McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 1.26 MB

english, 2012

23

OR13-002 Recessive mutations in CECR1, encoding adenosine deaminase 2 (ADA2), cause systemic and cutaneous polyarteritis nodosa (PAN)

E Levy-Lahad,P Elkan-Navon,R Segel,SB Pierce,T Walsh…

Journal:

Pediatric Rheumatology

Year:

2013

Language:

english

File:

PDF, 99 KB

english, 2013

24

Adaptive Accelerated Molecular Dynamics (Ad-AMD) Revealing the Molecular Plasticity of P450cam

Markwick, Phineus R. L., Pierce, Levi C. T., Goodin, David B., McCammon, J. Andrew

Journal:

The Journal of Physical Chemistry Letters

Year:

2011

Language:

english

File:

PDF, 3.96 MB

english, 2011

25

On the Use of Accelerated Molecular Dynamics to Enhance Configurational Sampling in Ab Initio Simulations

Bucher, Denis, Pierce, Levi C. T., McCammon, J. Andrew, Markwick, Phineus R. L.

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 3.06 MB

english, 2011

26

Protecting High Energy Barriers: A New Equation to Regulate Boost Energy in Accelerated Molecular Dynamics Simulations

Sinko, William, de Oliveira, César Augusto F., Pierce, Levi C. T., McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 3.32 MB

english, 2012

27

Final report of phase II study of sorafenib, cytarabine and idarubicin for initial therapy in younger patients with acute myeloid leukemia

Ravandi, F, Arana Yi, C, Cortes, J E, Levis, M, Faderl, S, Garcia-Manero, G, Jabbour, E, Konopleva, M, O'Brien, S, Estrov, Z, Borthakur, G, Thomas, D, Pierce, S, Brandt, M, Pratz, K, Luthra, R, Andree

Journal:

Year:

2014

Language:

english

File:

PDF, 402 KB

english, 2014

28

Ibuprofen with Acetaminophen for Postoperative Pain Control following Tonsillectomy Does Not Increase Emergency Department Utilization

Bedwell, J. R., Pierce, M., Levy, M., Shah, R. K.

Journal:

Otolaryngology - Head and Neck Surgery

Year:

2014

Language:

english

File:

PDF, 124 KB

english, 2014

29

Continuing Education as a Catalyst for Inter-Professional Collaboration

Allen, Margaret(Peg), Jacobs, Susan Kaplan, Levy, June, Pierce, Susan, Pravikoff, Diane, Tanner, Annelle

Journal:

Medical Reference Services Quarterly

Year:

2005

Language:

english

File:

PDF, 108 KB

english, 2005

30

The Tetraspanin CD81 Is Necessary for Partitioning of Coligated CD19/CD21-B Cell Antigen Receptor Complexes into Signaling-Active Lipid Rafts

Cherukuri, A., Shoham, T., Sohn, H. W., Levy, S., Brooks, S., Carter, R., Pierce, S. K.

Journal:

The Journal of Immunology

Year:

2004

Language:

english

File:

PDF, 1.25 MB

english, 2004

31

Direct Evidence of Endothelial Oxidative Stress With Aging in Humans: Relation to Impaired Endothelium-Dependent Dilation and Upregulation of Nuclear Factor- B

Donato, A. J., Eskurza, I., Silver, A. E., Levy, A. S., Pierce, G. L., Gates, P. E., Seals, D. R.

Journal:

Circulation Research

Year:

2007

Language:

english

File:

PDF, 615 KB

english, 2007

32

Garrod's fourth inborn error of metabolism solved by the identification of mutations causing pentosuria

Pierce, S. B., Spurrell, C. H., Mandell, J. B., Lee, M. K., Zeligson, S., Bereman, M. S., Stray, S. M., Fokstuen, S., MacCoss, M. J., Levy-Lahad, E., King, M.-C., Motulsky, A. G.

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.21 MB

english, 2011

33

Accelerating chemical reactions: Exploring reactive free-energy surfaces using accelerated ab initio molecular dynamics

Pierce, Levi C. T., Markwick, Phineus R. L., McCammon, J. Andrew, Doltsinis, Nikos L.

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 938 KB

english, 2011

34

A Prospective Study of Arsenic Exposure From Drinking Water and Incidence of Skin Lesions in Bangladesh

Argos, M., Kalra, T., Pierce, B. L., Chen, Y., Parvez, F., Islam, T., Ahmed, A., Hasan, R., Hasan, K., Sarwar, G., Levy, D., Slavkovich, V., Graziano, J. H., Rathouz, P. J., Ahsan, H.

Journal:

American Journal of Epidemiology

Year:

2011

Language:

english

File:

PDF, 131 KB

english, 2011

35

Retrieving aerosol in a cloudy environment: aerosol availability as a function of spatial and temporal resolution

Remer, L. A., Mattoo, S., Levy, R. C., Heidinger, A., Pierce, R. B., Chin, M.

Journal:

Atmospheric Measurement Techniques Discussions

Year:

2012

Language:

english

File:

PDF, 2.46 MB

english, 2012

36

Retrieving aerosol in a cloudy environment: aerosol product availability as a function of spatial resolution

Remer, L. A., Mattoo, S., Levy, R. C., Heidinger, A., Pierce, R. B., Chin, M.

Journal:

Atmospheric Measurement Techniques

Year:

2012

Language:

english

File:

PDF, 3.85 MB

english, 2012

37

Distal Loop Flexibility of a Regulatory Domain Modulates Dynamics and Activity of C-Terminal Src Kinase (Csk)

Barkho, Sulyman, Pierce, Levi C. T., McGlone, Maria L., Li, Sheng, Woods, Virgil L., Walker, Ross C., Adams, Joseph A., Jennings, Patricia A., Levitt, Michael

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

38

Environmental and chemotherapeutic agents induce breakage at genes involved in leukemia-causing gene rearrangements in human hematopoietic stem/progenitor cells

Thys, Ryan G., Lehman, Christine E., Pierce, Levi C.T., Wang, Yuh-Hwa

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2015

Language:

english

File:

PDF, 838 KB

english, 2015

39

Garrod's fourth inborn error of metabolism solved by the identification of mutations causing pentosuria

Sarah B. Pierce, Cailyn H. Spurrell, Jessica B. Mandell, Ming K. Lee, Sharon Zeligson, Michael S. Bereman, Sunday M. Stray, Siv Fokstuen, Michael J. MacCoss, Ephrat Levy-Lahad, Mary-Claire King and Ar

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.30 MB

english, 2011

40

Predictors of Marijuana Use and Uptake Among Teenagers in Sydney, Australia

Levy, Susan J., Pierce, John P.

Journal:

Substance Use & Misuse

Year:

1990

Language:

english

File:

PDF, 1.02 MB

english, 1990

41

A prospective study of a protocol that reduces readmission after liver transplantation

Russo, Mark W., Levi, David M., Pierce, Ruth, Casingal, Vincent, Eskind, Lon, deLemos, Andrew, Schmeltzer, Paul A., Zamor, Philippe J.

Journal:

Liver Transplantation

Year:

2016

Language:

english

File:

PDF, 201 KB

english, 2016

42

Deep sequencing of 10,000 human genomes

Telenti, Amalio, Pierce, Levi C. T., Biggs, William H., di Iulio, Julia, Wong, Emily H. M., Fabani, Martin M., Kirkness, Ewen F., Moustafa, Ahmed, Shah, Naisha, Xie, Chao, Brewerton, Suzanne C., Bulsa

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.81 MB

english, 2016

43

An exome array study of the plasma metabolome

Rhee, Eugene P., Yang, Qiong, Yu, Bing, Liu, Xuan, Cheng, Susan, Deik, Amy, Pierce, Kerry A., Bullock, Kevin, Ho, Jennifer E., Levy, Daniel, Florez, Jose C., Kathiresan, Sek, Larson, Martin G., Vasan,

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 448 KB

english, 2016

44

A spatially comprehensive, hydrometeorological data set for Mexico, the U.S., and Southern Canada 1950–2013

Livneh, Ben, Bohn, Theodore J., Pierce, David W., Munoz-Arriola, Francisco, Nijssen, Bart, Vose, Russell, Cayan, Daniel R., Brekke, Levi

Journal:

Scientific Data

Year:

2015

Language:

english

File:

PDF, 4.89 MB

english, 2015

45

A protocol for decreasing readmission rates after liver transplantation

Filsinger, Michael, Russo, Mark W., Levi, David M., Pierce, Ruth, Casingal, Vincent, Eskind, Lon, deLemos, Andrew, Schmeltzer, Paul A., Zamor, Philippe J., Burick, Alexzandria

Journal:

Journal of the American Academy of Physician Assistants

Year:

2016

Language:

english

File:

PDF, 70 KB

english, 2016

46

Strategies that reduce 90-day readmissions and inpatient costs after liver transplantation

Zeidan, Joseph H, Levi, David M, Pierce, Ruth, Russo, Mark W

Journal:

Liver Transplantation

Year:

2018

Language:

english

File:

PDF, 735 KB

english, 2018

47

Theoretical Insights Reveal Novel Motions in Csk’s SH3 Domain That Control Kinase Activation

Barkho, Sulyman, Pierce, Levi C. T., Li, Sheng, Adams, Joseph A., Jennings, Patricia A., Buday, Laszlo

Journal:

Year:

2015

Language:

english

File:

PDF, 3.89 MB

english, 2015

48

Alternative DNA secondary structure formation affects RNA polymerase II promoter-proximal pausing in human

Szlachta, Karol, Thys, Ryan G., Atkin, Naomi D., Pierce, Levi C. T., Bekiranov, Stefan, Wang, Yuh-Hwa

Journal:

Year:

2018

Language:

english

File:

PDF, 3.07 MB

english, 2018

49

Sorafenib Combined with 5-azacytidine (AZA) in Older Patients with Untreated FLT3 -ITD Mutated Acute Myeloid Leukemia (AML)

Ohanian, Maro, Garcia-Manero, Guillermo, Levis, Mark, Jabbour, Elias, Daver, Naval, Borthakur, Gautam, Kadia, Tapan, Pierce, Sherry, Burger, Jan, Richie, Mary Ann, Patel, Keyur, Andreeff, Michael, Est

Journal:

American Journal of Hematology

Year:

2018

Language:

english

File:

PDF, 1.24 MB

english, 2018

50

DNA Secondary Structure at Chromosomal Fragile Sites in Human Disease

Thys, Ryan G., E. Lehman, Christine, C. T. Pierce, Levi, Wang, Yuh-Hwa

Journal:

Current Genomics

Year:

2015

Language:

english

File:

PDF, 1.54 MB

english, 2015

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